SILPAG documentation

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Contents:

• Getting Started with SILPAG
  • Download Demo Data
  • Quick Start
• Downstream Analysis: CRG Identification, Alteration Type Disentanglement & CRR Delineation
  • 0. Setup
  • 1. Load Data & Preprocessing
  • 2. Load Trained Model & Generate View-Transferred SGMs
• Task 1: CRG Identification
  • Store CRG Results in AnnData
• Task 2: Alteration Type Disentanglement
  • Detailed Results Table
  • Example CRG Visualisation
• Task 3: CRR Delineation
  • Marker-based CRR Delineation
  • Store CRR Results
• Save All Results